Preheat oven to 350 degrees F. Line a 12-cup muffin pan with muffin cups or grease with cooking spray.
Stir together the flours, cinnamon, baking powder, baking soda and salt in a large bowl.
Whisk together the maple syrup, oil, flax eggs, and vanilla in a separate bowl.
Stir liquid mixture into the flour mixture just until evenly combined, then add in the strawberries and chocolate chips.
Divide batter among the 10 muffin cups, then bake for 20-22 minutes, or until a toothpick inserted in the center comes out clean. Allow to cool in the pan for 10 minutes, then remove to finish cooling on a wire rack.